Staphylococcus
SEM micrograph of S. aureus colonies; note the grape-like clustering common to Staphylococcus species.
Scientific classification
Kingdom: Bacteria
Phylum: Firmicutes
Class: Bacilli
Order: Bacillales
Family: Staphylococcaceae
Genus: Staphylococcus
Rosenbach 1884
Species

S. arlettae
S. agnetis
S. aureus
S. auricularis
S. capitis
S. caprae
S. carnosus
S. caseolyticus
S. chromogenes
S. cohnii
S. condimenti
S. delphini
S. devriesei
S. epidermidis
S. equorum
S. felis
S. fleurettii
S. gallinarum
S. haemolyticus
S. hominis
S. hyicus
S. intermedius
S. kloosii
S. leei
S. lentus
S. lugdunensis
S. lutrae
S. massiliensis
S. microti
S. muscae
S. nepalensis
S. pasteuri
S. pettenkoferi
S. piscifermentans
S. pseudintermedius
S. pseudolugdunensis
S. pulvereri
S. rostri
S. saccharolyticus
S. saprophyticus
S. schleiferi
S. sciuri
S. simiae
S. simulans
S. stepanovicii
S. succinus
S. vitulinus
S. warneri
S. xylosus

Staphylococcus (from the Greek: σταφυλή, staphylē, "grape" and κόκκος, kókkos, "granule") is a genus of Gram-positive bacteria. Under the microscope, they appear round (cocci), and form in grape-like clusters.[1]

The Staphylococcus [3]

Taxonomy

The taxonomy is based on 16s rRNA sequences,[4] and most of the staphylococcal species fall into 11 clusters:

  1. S. aureus group – S. aureus, S. simiae
  2. S. auricularis group – S. auricularis
  3. S. carnosus group – S. carnosus, S. condimenti, S. massiliensis, S. piscifermentans, S. simulans
  4. S. epidermidis group – S. capitis, S. caprae, S. epidermidis, S. saccharolyticus
  5. S. haemolyticus group – S. devriesei, S. haemolyticus, S. hominis
  6. S. hyicus-intermedius group – S. chromogenes, S. felis, S. delphini, S. hyicus, S. intermedius, S. lutrae, S. microti, S. muscae, S. pseudintermedius, S. rostri, S. schleiferi
  7. S. lugdunensis group – S. lugdunensis
  8. S. saprophyticus group – S. arlettae, S. cohnii, S. equorum, S. gallinarum, S. kloosii, S. leei, S. nepalensis, S. saprophyticus, S. succinus, S. xylosus
  9. S. sciuri group – S. fleurettii, S. lentus, S. sciuri, S. stepanovicii, S. vitulinus
  10. S. simulans group – S. simulans
  11. S. warneri group – S. pasteuri, S. warneri

A twelfth group – that of S. caseolyticus – has now been moved to a new genus Macrococcus, the species of which are currently the closest known relatives of the Staphylococci.[5]

Subspecies

S. aureus subsp. aureus
S. aureus subsp. anaerobius

S. capitis subsp. capitis
S. capitis subsp. urealyticus

S. carnosus subsp. carnosus
S. carnosus subsp. utilis

S. cohnii subsp. cohnii
S. cohnii subsp. urealyticus

S. equorum subsp. equorum
S. equorum subsp. linens

S. hominis subsp. hominis
S. hominis subsp. novobiosepticus

S. saprophyticus subsp. bovis
S. saprophyticus subsp. saprophyticus

S. schleiferi subsp. coagulans
S. schleiferi subsp. schleiferi

S. sciuri subsp. carnaticus
S. sciuri subsp. rodentium
S. sciuri subsp. sciuri

S. succinus subsp. casei
S. succinus subsp. succinus

Notes

As with all generic names in binomial nomenclature, Staphylococcus is capitalized when used alone or with a specific species. Also, the abbreviations Staph and S. when used with a species (S. aureus) are correctly italicized and capitalized (though often errors in this are seen in popular literature). However, Staphylococcus is not capitalized or italicized when used in adjectival forms, as in a staphylococcal infection, or as the plural (staphylococci).[6]

The S. saprophyticus and S. sciuri groups are generally novobiocin-resistant, as is S. hominis subsp. novobiosepticus.

Members of the S. sciuri group are oxidase-positive due to their possession of the enzyme cytochrome c oxidase. This group is the only clade within the Staphylococci to possess this gene.

The S. sciuri group appears to be the closest relations to the genus Macrococcus.

Staphylococcus pulvereri has been shown to be a junior synonym of Staphylococcus vitulinus.[7]

Within these clades, the S. haemolyticus and S. simulans groups appear to be related, as do the S. aureus and S. epidermidis groups.[8]

S. lugdunensis appears to be related to the S. haemolyticus group.

S. croceolyticus may be related to S. haemolyticus, but this needs to be confirmed.

The taxonomic position of S. croceolyticus, S. leei, S. lyticans and S. pseudolugdunensis has yet to be clarified. The published descriptions of these species do not appear to have been validly published to date (2010).

Biochemical identification

Assignment of a strain to the genus Staphylococcus requires it to be a Gram-positive coccus that forms clusters, produces catalase, has an appropriate cell wall structure (including peptidoglycan type and teichoic acid presence) and G + C content of DNA in a range of 30–40 mol%.

Staphylococcus species can be differentiated from other aerobic and facultative anaerobic, Gram-positive cocci by several simple tests. Staphylococcus spp. are facultative anaerobes (capable of growth both aerobically and anaerobically). All species grow in the presence of bile salts.

It was believed that all species were coagulase-positive however it is now known that not all Staphylococcus are coagulase positive.[1][9][10]

Growth can also occur in a 6.5% NaCl solution. On Baird Parker medium, Staphylococcus spp. grow fermentatively, except for S. saprophyticus, which grows oxidatively. Staphylococcus spp. are resistant to bacitracin (0.04 U disc: resistance = < 10 mm zone of inhibition) and susceptible to furazolidone (100 μg disc: resistance = < 15 mm zone of inhibition). Further biochemical testing is needed to identify to the species level.

When the bacterium divides it divides along two axes, so forming clumps of bacteria. This is as opposed to streptococci which divide along one axis and so form chains (strep. meaning twisted or pliant).

Coagulase production

One of the most important phenotypical features used in the classification of staphylococci is their ability to produce coagulase, an enzyme that causes blood clot formation.

Six species are currently recognised as being coagulase-positive: S. aureus, S. delphini, S. hyicus, S. intermedius, S. lutrae,S. pseudintermedius and S. schleiferi subsp. coagulans. These species belong to two separate groups – the S. aureus (S. aureus alone) group and the S. hyicus-intermedius group (the remaining five). S. aureus can also be found as being coagulase-negative.

A seventh species has also been described – Staphylococcus leei – from patients with gastritis.[11]

S. aureus is coagulase-positive, meaning it produces coagulase. However, while the majority of S. aureus strains are coagulase-positive, some may be atypical in that they do not produce coagulase. S. aureus is catalase-positive (meaning that it can produce the enzyme catalase) and able to convert hydrogen peroxide (H2O2) to water and oxygen, which makes the catalase test useful to distinguish staphylococci from enterococci and streptococci.

zoonosis.

S. epidermidis, a coagulase-negative species, is a commensal of the skin, but can cause severe infections in immune-suppressed patients and those with central venous catheters. S. saprophyticus, another coagulase-negative species that is part of the normal vaginal flora, is predominantly implicated in genitourinary tract infections in sexually active young women. In recent years, several other Staphylococcus species have been implicated in human infections, notably S. lugdunensis, S. schleiferi, and S. caprae.

Common abbreviations for coagulase-negative staphylococcus species are CoNS and CNS.

Genomics and molecular biology

The first S. aureus genomes to be sequenced were those of N315 and Mu50 in 2001. Many more complete S. aureus genomes have been submitted to the public databases, making it one of the most extensively sequenced bacteria. The use of genomic data is now widespread and provides a valuable resource for researchers working with S. aureus. Whole genome technologies, such as sequencing projects and microarrays, have shown an enormous variety of S. aureus strains. Each contains different combinations of surface proteins and different toxins. Relating this information to pathogenic behaviour is one of the major areas of staphylococcal research. The development of molecular typing methods has enabled the tracking of different strains of S. aureus. This may lead to better control of outbreak strains. A greater understanding of how the staphylococci evolve, especially due to the acquisition of mobile genetic elements encoding resistance and virulence genes is helping to identify new outbreak strains and may even prevent their emergence.[12]

The widespread incidence of antibiotic resistance across various strains of S. aureus, or across different species of Staphylococcus has been attributed to horizontal gene transfer of genes encoding antibiotic/metal resistance and virulence. A recent study demonstrated the extent of horizontal gene transfer among Staphylococcus to be much greater than previously expected, and encompasses genes with functions beyond antibiotic resistance and virulence, and beyond genes residing within the mobile genetic elements.[13]

Various strains of Staphylococcus are available from biological research centres, such as the National Collection of Type Cultures (NCTC).

Host range

Unknown variety of Staphylococcus, Gram-stained - numbered ticks on the scale are 11 µm apart.

Members of the genus Staphylococcus frequently colonize the skin and upper respiratory tracts of mammals and birds. Some species specificity has been observed in host range, such that the Staphylococcus species observed on some animals appear more rarely on more distantly related host species.[14] Some of the observed host specificity includes:

S. arlattaechickens, goats
S. auricularisdeer, dogs, humans
S. capitis – humans
S. caprae – goats, humans
S. cohnii – chickens, humans
S. delphinidolphins
S. devrieseicattle
S. epidermiditis – humans
S. equorumhorses
S. feliscats
S. fleurettii – goats
S. gallinarum – chickens, goats, pheasants
S. haemolyticus – humans, Cercocebus, Erythrocebus, Lemur, Macca, Microcebus, Pan
S. hyicuspigs
S. leei – humans
S. lentus – goats, rabbits, sheep
S. lugdunensis – humans, goats
S. lutraeotters
S. microti – voles (Microtus arvalis)
S. nepalensis – goats
S. pasteuri – humans, goats
S. pettenkoferi – humans
S. pseudintermedius – dogs
S. rostripigs
S. schleiferi – humans
S. sciuri – humans, dogs, goats
S. simiae – South American squirrel monkeys (Saimiri sciureus)
S. simulans – humans
S. warneri – humans, Cercopithecoidea, Pongidae
S. xylosus – humans

Clinical

Staphylococcus can cause a wide variety of diseases in humans and animals through either toxin production or penetration. Staphylococcal toxins are a common cause of food poisoning, for they can be produced by bacteria growing in improperly stored food items. The most common sialadenitis is caused by staphylococci, as bacterial infections.[15]

See also

Notes and references

  1. ^ a b Ryan KJ, Ray CG, ed. (2004). Sherris Medical Microbiology (4th ed.). McGraw Hill.  
  2. ^ Harris L.G, Foster S.J, Richards S. G. (2002). "An introduction to Staphylococcus aureus, and techniques for identifying and quantifying S. aureus adhesins in relation to adhesion to biomaterials: review". European cells and materials 4: 39–60.  
  3. ^ Madigan M, Martinko J, ed. (2005). Brock Biology of Microorganisms (11th ed.). Prentice Hall.  
  4. ^ Takahashi T, Satoh I, Kikuchi N. (1999). based on 16S rRNA gene sequence analysis"Staphylococcus"Phylogenetic relationships of 38 taxa of the genus . Int. J. Syst. Bacteriol. 49 (2): 725–728.  
  5. ^ Kloos WE, Ballard DN, George CG, Webster JA, Hubner RJ, Ludwig W, Schleifer KH, Fiedler F, Schubert K (1998). " Macrococcus carouselicus sp. nov. and Macrococcus bovicus sp. novsp. nov., and Macrococcus equipercicus and comb. nov., gen. nov. Macrococcus caseolyticus through description of Staphylococcus"Delimiting the genus . Int J Syst Bacteriol 48 (3): 859–877.  
  6. ^ See genus and species capitalization.
  7. ^ Svec P., Vancanneyt M., Sedláek I., Engelbeen K., Stetina V., Swings, J. & Petrá, P. (2004). vitulinus Webster et al 1994"Staphylococcus Zakrzewska-Czerwiska et al. 1995 as a later synonym of Staphylococcus pulvereri"Reclassification of . Int. J. Syst. Evol. Microbiol 54 (6): 2213–2215.  
  8. ^ Ghebremedhin B, Layer F, König W, König B (2008). gene sequences"tuf, and sodA, rpoB, hsp60 species based on different partial gap, 16S rRNA, Staphylococcus"Genetic classification and distinguishing of . J. Clin. Microbiol. 46 (3): 1019–1025.  
  9. ^ PreTest, Surgery, 12th ed., p. 88
  10. ^ Matthews KR, Roberson J, Gillespie BE, Luther DA, Oliver SP (1997). "Identification and Differentiation of Coagulase-Negative Staphylococcus aureus by Polymerase Chain Reaction". Journal of Food Protection 60 (6): 686–8. 
  11. ^ Jin M, Rosario W, Watler E, Calhoun DH (2004). and determination of subunit structure"Staphylococcus leei"Development of a large-scale HPLC-based purification for the urease from . Protein Expr. Purif. 34 (1): 111–117.  
  12. ^ Lindsay J (editor). (2008). Staphylococcus: Molecular Genetics. Caister Academic Press.  
  13. ^ Chan CX, Beiko RG, Ragan MA (2011). extends beyond mobile elements"Staphylococcus"Lateral transfer of genes and gene fragments in . J Bacteriol 193 (15): 3964–3977.  
  14. ^ Kloos WE (1980). "Natural Populations of the Genus Staphylococcus". Annual Review of Microbiology 34: 559–592.  
  15. ^ "Sialoadenitis: inflammation of the salivary glands". The Medical Consumer's Advocate. 2001-01-04. Retrieved 2011-01-04. 

External links

  • Staphylococcus genomes and related information at PATRIC, a Bioinformatics Resource Center funded by NIAID

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